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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38665767_38665852_F

Intron Information:

Intron Rank:
144871
Intron Class:
major
Intron Phase:
Intron Coordinates:
38665767 - 38665852
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTACA
5'SS Class:
major
3'SS Sequence:
CAATTTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
AATGCTGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
73.7
36.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
75.9
0.58
0.9
73.3
36.5
Minor 5ss
35
-1.7
2.8
44.1
43
Minor BPS
44.7
-0.3
2.2
63.26
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028106
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037307
38654488 - 38667692
13205