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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3866739_3869521_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3866739 - 3869521
Intron Length:
2783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
CTTTCCCTAAGT
Flanking Amino Acid:
KSRPKARSSTEGRECVNCGA
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
64
0.52
2
84.58
42.1

Associated Gene:

Gene:
GATA3
Ensembl Gene ID:
ENSAPLG00000010046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010467
3862542 - 3881647
19106
ENSAPLT00000042132
3861714 - 3881647
19934