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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38683177_38685689_F

Intron Information:

Intron Rank:
128015
Intron Class:
major
Intron Phase:
Intron Coordinates:
38683177 - 38685689
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTGCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.71
0.8
82.2
34.4
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
65.1
0.55
1.7
80.47
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018992
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031889
38682887 - 38686441
3555