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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38686155_38687806_R

Intron Information:

Intron Rank:
144964
Intron Class:
major
Intron Phase:
Intron Coordinates:
38686155 - 38687806
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTTATTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
53.1
0.18
1.6
71.5
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021683
38685805 - 38690698
4894