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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38878358_38878715_F

Intron Information:

Intron Rank:
124779
Intron Class:
major
Intron Phase:
Intron Coordinates:
38878358 - 38878715
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CAATCTCAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85
0.79
0.7
81.8
29.9
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
47
-0.2
2
56.82
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017273
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036805
38878337 - 38879963
1627