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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38902541_38911100_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38902541 - 38911100
Intron Length:
8560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCC
5'SS Class:
major
3'SS Sequence:
ATATTAACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTATATTAACT
Flanking Amino Acid:
NQLMEHNRSSVLYRIYHGFL
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
63.4
41.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.7
0.49
1
63.9
41.1
Minor 5ss
31.8
-2.1
3.3
42.8
44.3
Minor BPS
66.3
0.59
1.6
82.78
37.7

Associated Gene:

Gene:
KCNC2
Ensembl Gene ID:
ENSAPLG00000008754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030509
38902269 - 39001057
98789