Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_38908646_38911100_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38908646 - 38911100

Intron Length:

2455

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGACCC

5'SS Class:

major

3'SS Sequence:

GTGCTTTAACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TTGTCTGTAAAT

Flanking Amino Acid:

NQLMEHNRSSVLSGEDSAGS

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

63.4

41.4

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

65.8

0.36

1.1

59.3

45.3

Minor 5ss

31.8

-2.1

3.3

42.8

44.3

Minor BPS

58.7

0.35

2.1

80.75

41.3

Associated Gene:

Gene:

KCNC2

Ensembl Gene ID:

ENSAPLG00000008754

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036019

38902269 - 39001057

98789

ENSAPLT00000028090

38908086 - 39001057

92972

ENSAPLT00000009099

38902269 - 39001057

98789