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Intron Name: Anas_platyrhynchos_platyrhynchos_1_39020202_39024175_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39020202 - 39024175

Intron Length:

3974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

GTTGCTATTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTTTCACTAATC

Flanking Amino Acid:

NIDETAMDFLKAPSEEFKQE

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

73.9

0.54

0.9

70.8

39.7

Minor 5ss

34.7

-1.7

3.2

41.8

38.8

Minor BPS

63.9

0.41

1.9

80.62

33.6

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370