About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39026659_39027492_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39026659 - 39027492
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAATT
Flanking Amino Acid:
KLRFDSRIISRNGRDACREL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.3
0.77
0.7
82.5
28.6
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
58.7
0.35
1.5
71.95
39.8

Associated Gene:

Gene:
CAPS2
Ensembl Gene ID:
ENSAPLG00000011831
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020719
39014934 - 39046458
31525
ENSAPLT00000012318
39016083 - 39045452
29370