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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39027568_39028699_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39027568 - 39028699
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATTAATA
Flanking Amino Acid:
RFRKRTLHETKIRTKSGLTE
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
79.4
0.73
1
80.1
32
Major PPT
81.9
0.72
0.8
76.4
37
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
69.7
0.62
1.5
76.28
34.2

Associated Gene:

Gene:
CAPS2
Ensembl Gene ID:
ENSAPLG00000011831
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020719
39014934 - 39046458
31525
ENSAPLT00000012318
39016083 - 39045452
29370