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Intron Name: Anas_platyrhynchos_platyrhynchos_1_39028820_39030799_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39028820 - 39030799

Intron Length:

1980

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTGGTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTCAG

U12 Branch Point Sequence:

TAGTCAGGGAGC

Flanking Amino Acid:

VEQVMVDQLSRAVISDPEQS

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

22.1

Major BPS

53.1

0.08

1.6

63.4

44.3

Major PPT

78.2

0.63

80.2

37.3

Minor 5ss

-2.1

3.1

39.9

46.1

Minor BPS

37.1

-1

2.4

48.22

41.7

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370