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Intron Name: Anas_platyrhynchos_platyrhynchos_1_39038164_39040928_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39038164 - 39040928

Intron Length:

2765

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTAG

5'SS Class:

major

3'SS Sequence:

TTCTTTGCTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTATATCGATT

Flanking Amino Acid:

SRRPCQKKTEHSVLEQKIIP

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

38.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

80.1

0.68

0.8

73.5

37.1

Minor 5ss

35.4

-1.7

3.3

45.9

49.3

Minor BPS

48.4

-0

1.8

72.85

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370