Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39042040_39042155_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39042040 - 39042155

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCATTTTTAATT

Flanking Amino Acid:

LRRLGDSDEEDGNSYIPYSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

83.4

28.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.5

0.78

0.8

83.2

Minor 5ss

36.3

-1.5

3.3

49.5

46.6

Minor BPS

72.8

0.79

1.1

79.64

37.1

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370