Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39042202_39043234_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39042202 - 39043234

Intron Length:

1033

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

TAACTTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

ATGATTTTAACT

Flanking Amino Acid:

TRASRGPRPPEVPCLDLRRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

66.4

45.1

Major BPS

89.7

0.98

0.7

89.9

Major PPT

76.6

0.6

0.9

70.3

35.7

Minor 5ss

39.1

-1.2

46.9

42.4

Minor BPS

68.9

0.67

1.2

78.4

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370