Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39043282_39045371_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39043282 - 39045371

Intron Length:

2090

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTTAA

5'SS Class:

major

3'SS Sequence:

TGTGTCCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

CATGTAATAATA

Flanking Amino Acid:

LSSRGKKRSQGWRPDTRASR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

75.7

29.3

Major BPS

0.75

78.6

Major PPT

77.2

0.61

0.8

74.3

36.5

Minor 5ss

47.3

-0.3

2.5

57.4

41.7

Minor BPS

44.6

-0.4

1.9

53.89

38.8

Associated Gene:

Gene:

CAPS2

Ensembl Gene ID:

ENSAPLG00000011831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020719

39014934 - 39046458

31525

ENSAPLT00000012318

39016083 - 39045452

29370