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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39045482_39045940_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39045482 - 39045940
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGACTTGA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTCTAATACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
63.7
39
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
39.8
-1.1
2.8
46.7
43.9
Minor BPS
47.9
-0
2.2
75.12
41.5

Associated Gene:

Gene:
CAPS2
Ensembl Gene ID:
ENSAPLG00000011831
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020719
39014934 - 39046458
31525