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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39048587_39050121_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39048587 - 39050121
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TAATCTTTCAGC
Flanking Amino Acid:
LLTQLDPLSNCVNALACEQK
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
67.6
0.44
1.2
75
40
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
50.2
-0
2
63.96
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028384
39046229 - 39053667
7439