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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39050213_39051456_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39050213 - 39051456
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
TTTTCTTTTGCT
Flanking Amino Acid:
KSTEDKAKETEHQLLELEQH
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
72.5
33.5
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
80.6
0.69
0.9
77.1
37.1
Minor 5ss
38.7
-1.3
3.1
51.6
45.1
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028384
39046229 - 39053667
7439