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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39051524_39052546_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39051524 - 39052546
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CAGCCTTTAACA
Flanking Amino Acid:
GVFAAYKFLKMKAHEENLAK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.9
0.56
1.1
76.6
36.3
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
65.7
0.49
1.3
65.74
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020051
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028384
39046229 - 39053667
7439