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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39054079_39055413_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39054079 - 39055413
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGAAG
5'SS Class:
major
3'SS Sequence:
TAATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTACTTTAATG
Flanking Amino Acid:
VPSASNMRQMSWDAALARTA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.2
43.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.4
0.66
0.9
73.4
41.4
Minor 5ss
30.4
-2.2
3.3
35.4
42.6
Minor BPS
68.7
0.45
1.4
67.54
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027496
39053905 - 39072889
18985