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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39068988_39069427_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39068988 - 39069427
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ACATATTTCACT
Flanking Amino Acid:
CTSICGHYTQVVWATSYKVG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
84.5
0.78
0.8
81.1
30.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
49.6
0.05
1.9
67.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025845
39066682 - 39072889
6208
ENSAPLT00000012430
39066682 - 39072889
6208
ENSAPLT00000026406
39066682 - 39072889
6208