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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39069541_39070729_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39069541 - 39070729
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTCTGCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
ACAGAGCTAACA
Flanking Amino Acid:
AAHFVCNYGPAGNYPTKPYE
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
65
42.7
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
82.8
0.74
0.8
77.1
31.6
Minor 5ss
34.5
-1.8
2.9
36.7
40.6
Minor BPS
39
-0.8
2.3
48.16
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027496
39053905 - 39072889
18985
ENSAPLT00000026406
39066682 - 39072889
6208
ENSAPLT00000025845
39066682 - 39072889
6208
ENSAPLT00000012430
39066682 - 39072889
6208