About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39070813_39072075_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39070813 - 39072075
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
SNDKCVDKLCVNAGREKLIS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
61.7
42.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75
0.56
0.8
68.6
31.5
Minor 5ss
32.4
-2
3
37.9
40.5
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026406
39066682 - 39072889
6208
ENSAPLT00000012430
39066682 - 39072889
6208
ENSAPLT00000027496
39053905 - 39072889
18985