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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39072103_39072188_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39072103 - 39072188
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGTATC
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCACACCTAATT
Flanking Amino Acid:
CVNAGREKLISYDNWYPDWD
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79.2
34.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.4
0.48
1.1
74.8
39.1
Minor 5ss
40.9
-1
3
54.3
37
Minor BPS
49.5
0.04
1.9
68.37
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026406
39066682 - 39072889
6208
ENSAPLT00000012430
39066682 - 39072889
6208
ENSAPLT00000027496
39053905 - 39072889
18985