About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39072363_39072650_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39072363 - 39072650
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
AACTCTGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGCTTCTTAACT
Flanking Amino Acid:
RLLFLVLSAAGIDCWRHHVD
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
60.9
0.24
1
57.7
42.3
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
77
0.92
1.2
82.73
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011934
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027496
39053905 - 39072889
18985
ENSAPLT00000025845
39066682 - 39072889
6208
ENSAPLT00000012430
39066682 - 39072889
6208