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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39100374_39100487_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39100374 - 39100487
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
KKRKRVEEIKAKQAEAVKKR
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
77.7
0.62
0.8
75.6
33.1
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
KRR1
Ensembl Gene ID:
ENSAPLG00000016378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017095
39098154 - 39103710
5557