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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39100566_39100731_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39100566 - 39100731
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AATTTTCTAACG
Flanking Amino Acid:
PFPPPQPESKIDKELASGEY
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
65.9
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.7
0.85
0.8
84.5
30.4
Minor 5ss
38.6
-1.3
2.9
48.1
47.4
Minor BPS
56.8
0.08
1.7
63.28
38.5

Associated Gene:

Gene:
KRR1
Ensembl Gene ID:
ENSAPLG00000016378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017095
39098154 - 39103710
5557