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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39101289_39102039_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39101289 - 39102039
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTATTAAAT
Flanking Amino Acid:
ALGPFSGLKEVRKVVLDTMK
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
69.8
0.45
1
63.2
41
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
64
0.52
1.7
84.04
35.8

Associated Gene:

Gene:
KRR1
Ensembl Gene ID:
ENSAPLG00000016378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017095
39098154 - 39103710
5557