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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39102124_39102218_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39102124 - 39102218
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TCTGTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCATCTTACAC
Flanking Amino Acid:
LLGPKGSTLKALELLTNCYI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
77.6
0.62
0.9
72.9
37.4
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
51.3
0.02
1.8
63.64
41.9

Associated Gene:

Gene:
KRR1
Ensembl Gene ID:
ENSAPLG00000016378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017095
39098154 - 39103710
5557