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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39102345_39102571_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39102345 - 39102571
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ATGTTACTACCT
Flanking Amino Acid:
LLARSVPFEQAVRILQDDVA
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
74.1
0.6
1
69
38.9
Major PPT
81.1
0.7
0.8
77.8
35.6
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
45.5
-0.2
2.1
67.79
42.9

Associated Gene:

Gene:
KRR1
Ensembl Gene ID:
ENSAPLG00000016378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017095
39098154 - 39103710
5557