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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39110339_39112123_R

Intron Information:

Intron Rank:
147998
Intron Class:
major
Intron Phase:
Intron Coordinates:
39110339 - 39112123
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTGTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
1
73.3
40.9
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046250
39109124 - 39113258
4135