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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39112214_39112389_R

Intron Information:

Intron Rank:
147999
Intron Class:
major
Intron Phase:
Intron Coordinates:
39112214 - 39112389
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGTGTT
5'SS Class:
major
3'SS Sequence:
TAATTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
76.4
39.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.7
0.62
0.9
74
41
Minor 5ss
33
-1.9
3.5
49.8
46.5
Minor BPS
59.2
0.37
2
79.54
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046250
39109124 - 39113258
4135