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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39237581_39237929_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39237581 - 39237929
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATATCTGTAAAC
Flanking Amino Acid:
GKAFCFKLYMSRRIKTQQNA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70.6
42.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
88
0.85
0.6
87.3
23.2
Minor 5ss
39.3
-1.2
3.5
55.1
49.1
Minor BPS
52
0.04
2.1
66.84
38.5

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368