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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39237581_39239265_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39237581 - 39239265
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATATCTGTAAAC
Flanking Amino Acid:
EENDPDYDPKQKDQNPAECK
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
88
0.85
0.6
87.3
23.2
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
52
0.04
2.1
66.84
38.5

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016895
39237392 - 39252759
15368