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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39238079_39239265_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39238079 - 39239265
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GGGATTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGCTCTTAATT
Flanking Amino Acid:
EENDPDYDPKQLEFISKEVS
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
67.5
0.39
1
58.2
47.2
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
71.3
0.75
1.2
79.35
36.9

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368