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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39240873_39241556_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39240873 - 39241556
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAGTTATTGACT
Flanking Amino Acid:
PPEVPESGDLDDDAEAILAA
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.8
0.78
0.9
81.4
35.3
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
61.7
0.45
1.6
76.69
39.8

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368