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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39243697_39244331_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39243697 - 39244331
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CTCTCTGCAATT
Flanking Amino Acid:
VKFSEVGQPMSFTLEFHFEP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
77.9
32.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
78.8
0.65
1
83.3
31.3
Minor 5ss
40.3
-1.1
2.7
48
42
Minor BPS
47.3
-0.1
2.2
67.06
44.8

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368