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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39244404_39244912_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39244404 - 39244912
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AGTTGAATAATT
Flanking Amino Acid:
NVDLLSDMVQEHDEPILKHL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
46.5
-0.1
2.2
69.58
41.1

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368