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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39245369_39245828_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39245369 - 39245828
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TCAAATTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TAGATCATAAAA
Flanking Amino Acid:
AALYQPLFDKRSEIINAIYE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
76.7
0.6
0.9
73.1
41.4
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
48.7
-0.1
1.7
59.55
39.5

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368