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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39249303_39251756_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39249303 - 39251756
Intron Length:
2454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTTCCAATT
Flanking Amino Acid:
EETGEDANSKARQLTVQMMQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77
0.61
0.9
75.8
33
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
49.8
0.06
1.8
71.91
39.9

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368