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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39251846_39252545_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39251846 - 39252545
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTCCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTATTATTAAAT
Flanking Amino Acid:
MADIDNKEQSELDQQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.3
0.41
0.9
63.8
37.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
58.8
0.35
1.7
75.05
41.2

Associated Gene:

Gene:
NAP1L1
Ensembl Gene ID:
ENSAPLG00000016178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020364
39237392 - 39252759
15368
ENSAPLT00000016895
39237392 - 39252759
15368