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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39284304_39284924_F

Intron Information:

Intron Rank:
150218
Intron Class:
major
Intron Phase:
Intron Coordinates:
39284304 - 39284924
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
TCCTCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCCTCTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.3
0.57
0.9
71.7
32.9
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
56.9
0.21
1.7
66.6
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028628
39283774 - 39285481
1708