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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39285017_39285311_F

Intron Information:

Intron Rank:
150219
Intron Class:
major
Intron Phase:
Intron Coordinates:
39285017 - 39285311
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCTATACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78
0.63
0.9
73.4
35.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
52.6
0.06
2
72.43
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046018
39284636 - 39285481
846
ENSAPLT00000028628
39283774 - 39285481
1708