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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39302715_39304267_F

Intron Information:

Intron Rank:
140466
Intron Class:
major
Intron Phase:
Intron Coordinates:
39302715 - 39304267
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATGCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
71
0.47
1
65.4
39.6
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
59
0.36
2.1
80.42
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039922
39302312 - 39305947
3636