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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39304410_39305646_F

Intron Information:

Intron Rank:
140467
Intron Class:
major
Intron Phase:
Intron Coordinates:
39304410 - 39305646
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTACACAGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
90.8
0.92
0.6
88.2
21.6
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
39.4
-0.7
2
59.51
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039922
39302312 - 39305947
3636