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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39334095_39334698_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39334095 - 39334698
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTTCTGTATTT
Flanking Amino Acid:
PDNQDSSGSEAQLMKHNTRI
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
73.9
0.59
1
81
30.2
Major PPT
81
0.7
0.9
73.6
41.7
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
50.2
0.08
2.2
74.81
43.2

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832