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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39335305_39336868_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39335305 - 39336868
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCACCTTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTATTCACCT
Flanking Amino Acid:
VTGEWHYKYADTRPWDPLND
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
68.6
36.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.5
0.42
0.9
61.5
39.8
Minor 5ss
31.2
-2.2
3.2
38.1
40.6
Minor BPS
49.1
0.01
2
72.86
44.2

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832