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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39340715_39341087_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39340715 - 39341087
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTGTTTGAATT
Flanking Amino Acid:
GSILAKSKFYGNSLSAILDG
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
75.8
0.58
1
71.2
43.2
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
56.2
0.27
1.5
71.39
40.7

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832