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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39341185_39341558_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39341185 - 39341558
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
NSKTFYIAEQVSHHPPISAF
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
39.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.7
0.85
0.8
85.4
27.8
Minor 5ss
38.5
-1.3
3.5
57.3
47.4
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832