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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39341658_39342264_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39341658 - 39342264
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTCTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TGTATGGTTACT
Flanking Amino Acid:
YLSGFYKKPKGLKKPYNPIL
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
78.5
31.1
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
46.8
-0.3
2.7
66.9
44.3
Minor BPS
39.9
-0.7
2.7
64.84
45.4

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832